Project: iedb_v5
Class Antigen

Concrete Class Extends 
        :THING
 
Direct Instances:
None
 
Direct Subclasses:
None
 
Class Documentation:
Antigen are substance that can elicit an immune response.


Template Slots
Slot name Documentation Type Allowed Values/Classes Cardinality Default
Does Antigen contain Epitope Structure Indicates if the antigen contains the epitope structure (the short sequence).

Boolean    0:1   
Does Antigen contain Epitope Source Indicates if the antigen contains the epitope source antigen.

Boolean    0:1   
Is antigen same as Epitope Source Species Indicates if the antigen is same as the species of epitope source.

Boolean    0:1   
Antigen Name Name of the Antigen.

String    0:1   
Gene Name Name of the Gene

String    0:1   
Chemical Type Categorization of epitope compound as lipid, carbohydrate, DNA, RNA, peptide, organic, inorganic, etc.

String    0:1   
Source Species Source species selected from a hierarchical list of species from NCBI taxonomy database.

String    0:1   
SMILES Structure SMILES notation for 2-D structure of epitope. SMILES stand for Simplified Molecular Input Line Entry Specification. SMILES is widely used as a general-purpose chemical nomenclature and data exchange format

String    0:1   
Linear Sequence Linear sequence of amino acids, if molecule is a peptide. Other chemical structures will be captured using SMILES structure.

String    0:1   
GenBank ID Unique identifier of gene sequence in GenBank database

String    0:1   
PDB ID Identification of source if structure is present in PDB.

String    0:1   
Natural Antigen Indicates whether the antigen is a natural or artificial compound. Natural here refers to things that exist in nature.

Boolean    0:1   
has Carrier Captures the information of a Carrier, if available.

Class  Carrier  0:1   

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Generated on Thu Jun 02 12:31:05 PDT 2005