Project: iedb_v5
Class Complex

Concrete Class Extends 
        :THING
 
Direct Instances:
None
 
Direct Subclasses:
None
 
Class Documentation:
Captures all structural data for molecule complexes.


Template Slots
Slot name Documentation Type Allowed Values/Classes Cardinality Default
PDB ID Identification of source if structure is present in PDB.

String    0:1   
Molecule 1 residues List of molecule residues. In the case of Epitope-MHC complex it will be epitope residues. In the case of Antigen-Antibody Complex, it will be Antigen residues. In the case of Epitope-MHC-TCR molecules, it will be Epitope-MHC residues.

String    0:1   
Molecule 2 residues List of molecule residues. In the case of Epitope-MHC complex it will be MHC residues. In the case of Antigen-Antibody Complex, it will be Antibody residues. In the case of Epitope-MHC-TCR molecules, it will be TCR residues.

String    0:1   
Molecule 1 Contact Area Contact area of molecule. In the case of Epitope-MHC complex it will be epitope contact area. In the case of Antigen-Antibody Complex, it will be Antigen contact area. In the case of Epitope-MHC-TCR molecules, it will be Epitope-MHC contact area.

Integer    0:1   
Molecule 2 Contact Area Contact area of molecule. In the case of Epitope-MHC complex it will be MHC contact area. In the case of Antigen-Antibody Complex, it will be Antibody contact area. In the case of Epitope-MHC-TCR molecules, it will be TCR contact area.

Integer    0:1   
Interacting Atom Pairs Pairs of atoms involved in the interaction between two molecules.

String    0:1   
Allosteric Effect This Boolean field indicates whether an allosteric effect has taken place. Allosteric effect is of or involving a change in the shape and activity of a molecule's structure that results from molecular binding with a regulatory substance at a site other than the active one where changes take place.

Boolean    0:1   
Cofactor/Effector Name Name of the cofactor changing the molecules interaction activity if such a change has taken place.

String    0:1   
Comments General Comments

String    0:1   

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Generated on Thu Jun 02 12:31:05 PDT 2005