Project: iedb_v5
Class Immunogen

Concrete Class Extends 
        :THING
 
Direct Instances:
None
 
Direct Subclasses:
None
 
Class Documentation:
Immunogen is a substance that is capable of inducing an immune response (antibody response or cell mediated immunity).


Template Slots
Slot name Documentation Type Allowed Values/Classes Cardinality Default
Does the Immunogen contain Epitope Structure Indicates if the immunogen contains the epitope structure (short sequence).

Boolean    0:1   
Does the Immunogen contain Epitope Source Indicates if the Immunogen contains the Epitope Source Antigen.

Boolean    0:1   
Is Immunogen same as Epitope Source Species Indicates if the immunogen is same as the species of the epitope.

Boolean    0:1   
Immunigen Name Name of the Immunogen.

String    0:1   
Adjuvant(s) Adjuvants are substances that are administered with the immunogen to enhance the immune response.

String    0:*   
Chemical Type Categorization of epitope compound as lipid, carbohydrate, DNA, RNA, peptide, organic, inorganic, etc.

String    0:1   
SMILES Structure SMILES notation for 2-D structure of epitope. SMILES stand for Simplified Molecular Input Line Entry Specification. SMILES is widely used as a general-purpose chemical nomenclature and data exchange format

String    0:1   
Source Species Source species selected from a hierarchical list of species from NCBI taxonomy database.

String    0:1   
Linear Sequence Linear sequence of amino acids, if molecule is a peptide. Other chemical structures will be captured using SMILES structure.

String    0:1   
GenBank ID Unique identifier of gene sequence in GenBank database

String    0:1   
SwissProt ID Unique identifier of protein sequence in Swiss-Prot database

String    0:1   
PDB ID Identification of source if structure is present in PDB.

String    0:1   
has Carrier Captures the information of a Carrier, if available.

Class  Carrier  0:1   

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Generated on Thu Jun 02 12:31:05 PDT 2005